Dataset

marine sediment metagenome Raw sequence reads

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The Roseobacter group within the family Rhodobacteraceae consists of nearly 70 genera and app. 180 species. They thrive in a broad variety of marine habitats and were found free-living in seawater, associated with micro and macro algae, marine sponges and invertebrates as well as in biofilms, sea ice and sediments. n the present study, we describe the abundance, distribution and diversity of the Roseobacter group in rather oligotrophic deep-sea sediments derived from the Pacific Ocean as all other benthic studies were performed on relatively eutrophic coastal sites or high-energy systems.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00002893.zip

Contacts:

Genomic and Applied Microbiology & Goettingen Genomics Laboratory
Genomic and Applied Microbiology & Goettingen Genomics Laboratory

12,401
occurrence records
722
taxa
8
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 12,401
100.0%
maximumDepthInMeters 6,745
54.4%
minimumDepthInMeters 6,745
54.4%
occurrenceStatus 12,401
100.0%
scientificNameID 12,401
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 6,745
54.4%
NO_MATCH 4,899
39.5%
MARINE_UNSURE 1,617
13.0%
NOT_MARINE 30
0.2%
WORMS_ANNOTATION_UNRESOLVABLE 8
0.1%
NO_ACCEPTED_NAME 5
0.0%

Measurement types

DNA derived data