Dataset

Copepod induced bacterial community Raw sequence reads

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Live copepods from the North Atlantic subtropical gyre were collected and rinsed to be used in bioassay-type experiments. Bacteria present in various seawater and copepod treatments were analyzed by targeting the 16S rRNA V3-V4 region. In this study, copepods were observed to increase growth of bacteria which were released to their surroundings. Additionally, copepods may be responsible for inhibiting or inducing growth of specific bacterial groups.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004041.zip

Contacts:

University of Massachusetts Dartmouth
University of Massachusetts Dartmouth

6,641
occurrence records
504
taxa
25
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 6,641
100.0%
decimalLatitude 66
1.0%
decimalLongitude 66
1.0%
maximumDepthInMeters 6,641
100.0%
minimumDepthInMeters 6,641
100.0%
occurrenceStatus 6,641
100.0%
scientificNameID 6,641
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 6,641
100.0%
NO_MATCH 1,897
28.6%
MARINE_UNSURE 570
8.6%
NO_COORD 66
1.0%
NO_ACCEPTED_NAME 16
0.2%
NOT_MARINE 9
0.1%
WORMS_ANNOTATION_UNRESOLVABLE 6
0.1%

Measurement types

DNA derived data