Dataset

Microbial communities associated with ferromanganese nodules and the surrounding sediments

OBIS Secretariat Open in mapper Explore occurrences

The formation and maintenance of deep-sea ferromanganese/polymetallic nodules still remains a mystery 140 years after their discovery. The wealth of rare metals concentrated in these nodules has spurred global interest in exploring the mining potential of these resources. The prevailing theory of abiotic formation has been called into question and the role of microbial metabolisms in nodule development is now an area of active research. To understand the community structure of microbes associated with nodules and their surrounding sediment, we performed targeted sequencing of the V4 hypervariable region of the 16S rRNA gene from three nodules collected from the central South Pacific. Results have shown that the microbial communities of the nodules are significantly distinct from the communities in the surrounding sediments, and that the interiors of the nodules harbor communities different from the exterior. This suggests not only differences in potential metabolisms between the nodule and sediment communities, but also differences in the dominant metabolisms of interior and exterior communities.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00002488.zip

Contacts:

University of Southern California
University of Southern California

3,812
occurrence records
347
taxa
6
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 3,812
100.0%
eventDate 3,812
100.0%
occurrenceStatus 3,812
100.0%
scientificNameID 3,812
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 1,317
34.5%
DEPTH_EXCEEDS_BATH 861
22.6%
MARINE_UNSURE 421
11.0%
NOT_MARINE 9
0.2%
WORMS_ANNOTATION_UNRESOLVABLE 9
0.2%
NO_ACCEPTED_NAME 1
0.0%

Measurement types

DNA derived data