Dataset

Equatorial Pacific Ocean Targeted loci environmental

OBIS Secretariat Open in mapper Explore occurrences

To (i) document vertical distributions of bacterial diversity and community composition, (ii) investigate how these communities vary from one oceanographic region to another, and (iii) test the extent to which bacterial communities of deep subseafloor sediment may originate in the water column, we used 454 pyrosequencing technology and the v4-v6 hypervariable region of the bacterial 16S rRNA gene to examine bacterial community composition (presence/absence and relative abundance) in the water column, near-seafloor sediment (5 cm), and subseafloor sediment at three environmentally distinct Pacific sites: the very high-productivity eastern equatorial upwelling region (EQP1), the moderately high-productivity open-ocean central equatorial upwelling region (EQP8) and the very low-productivity northern gyre (EQP11) (Figure 1).

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00002812.zip

Contacts:

Marine Biological Laboratory
Marine Biological Laboratory

9,225
occurrence records
884
taxa
55
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 9,225
100.0%
occurrenceStatus 9,225
100.0%
scientificNameID 9,225
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 3,328
36.1%
MARINE_UNSURE 898
9.7%
WORMS_ANNOTATION_UNRESOLVABLE 37
0.4%
NOT_MARINE 24
0.3%
NO_ACCEPTED_NAME 18
0.2%

Measurement types

DNA derived data