Dataset

Natural seawater bacterial community in exopolysaccharides utilization

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We report the microbial EPS degradation in incubation experiments with seawater from estuarine and open ocean sites (surface and deep water), shifts in microbial community structure during the incubation were investigated. Microbial genomic DNA was extracted from the polycarbonate membranes (microbial cells filtered) and the 16S rRNA gene sequences were amplified by PCR. To understand the changes in the bacterial community structure during the early stage of the incubations, we classified the OTUs based on their phylogenetic affiliations and determined their relative proportions on the total number of sequencing reads.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004697.zip

Contacts:

Xiamen University
Xiamen University

3,301
occurrence records
365
taxa
8
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 3,301
100.0%
maximumDepthInMeters 3,301
100.0%
minimumDepthInMeters 3,301
100.0%
occurrenceStatus 3,301
100.0%
scientificNameID 3,301
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 3,301
100.0%
NO_MATCH 939
28.4%
MARINE_UNSURE 316
9.6%
NO_ACCEPTED_NAME 8
0.2%

Measurement types

DNA derived data