Dataset

Marine metagenomes from the bioGEOTRACES project (2010-2011)

OBIS Australia Open in mapper Explore occurrences

Marine metagenomes from the bioGEOTRACES project Metagenome. Study details at https://www.ebi.ac.uk/metagenomics/studies/MGYS00005294 This dataset was sourced from GBIF https://www.gbif.org/dataset/3de01c29-b3d4-4eeb-bd5c-b2bb475566cc on 2023-10-10. It contains samples from CSIRO Voyage SS2011_V02 (details at http://127.0.0.1/data/trawler/survey_details.cfm?survey=SS2011_V02) and known within the GEOTRACES survey GP13. Of the 6000+ taxa, about 3,300 can be matched to WoRMS.

Citation
MGnify (2020). Marine metagenomes from the bioGEOTRACES project. Sampling event dataset https://doi.org/10.15468/oifcho accessed via GBIF.org on 2023-09-28
Published
October 27, 2023 at 02:21
First registration
October 27, 2023 at 02:22
License
This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License
URL
https://www.marine.csiro.au/ipt/resource?r=biogeotraces
Archive
https://www.marine.csiro.au/ipt/archive.do?r=biogeotraces

Contacts

Robert Finn
European Molecular Biology Laboratory

OBIS Australia Node manager
CSIRO National Collections and Marine Infrastructure Data Centre

261,915
total submitted occurrences
195,801
accepted occurrences
3,035
taxa
613
species

Taxa

Missing and invalid fields

Field Missing Invalid
scientificNameID 72,737 252
27.9%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 65,353
25.0%
MARINE_UNSURE 20,936
8.0%
NO_ACCEPTED_NAME 2,255
0.9%
NOT_MARINE 761
0.3%
WORMS_ANNOTATION_UNRESOLVABLE 480
0.2%
DEPTH_EXCEEDS_BATH 477
0.2%

Measurement types

DNA derived data