Dataset

Marine metagenomes from the bioGEOTRACES project (2010-2011)

OBIS Australia Open in mapper Explore occurrences

Marine metagenomes from the bioGEOTRACES project Metagenome. Study details at https://www.ebi.ac.uk/metagenomics/studies/MGYS00005294 This dataset was sourced from GBIF https://www.gbif.org/dataset/3de01c29-b3d4-4eeb-bd5c-b2bb475566cc on 2023-10-10. It contains samples from CSIRO Voyage SS2011_V02 (details at http://127.0.0.1/data/trawler/survey_details.cfm?survey=SS2011_V02) and known within the GEOTRACES survey GP13. Of the 6000+ taxa, about 3,300 can be matched to WoRMS.

Citation: MGnify (2020). Marine metagenomes from the bioGEOTRACES project. Sampling event dataset https://doi.org/10.15468/oifcho accessed via GBIF.org on 2023-09-28

Published: October 27, 2023 at 02:21

URL: https://www.marine.csiro.au/ipt/resource?r=biogeotraces

Robert Finn
European Molecular Biology Laboratory

261,915
occurrence records
3,035
taxa
613
species

Taxa

Missing and invalid fields

Field Missing Invalid
scientificNameID 72,737 252
27.9%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 65,353
25.0%
MARINE_UNSURE 20,936
8.0%
NO_ACCEPTED_NAME 2,255
0.9%
NOT_MARINE 761
0.3%
WORMS_ANNOTATION_UNRESOLVABLE 480
0.2%
DEPTH_EXCEEDS_BATH 477
0.2%

Measurement types

DNA derived data