Dataset

marine metagenome Raw sequence reads

OBIS Secretariat Open in mapper Explore occurrences

The microbial community of Sundarban Mangrove marine water samples

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00003074.zip

Contacts:

Jadavpur University
Jadavpur University

12,003
occurrence records
900
taxa
60
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 12,003
100.0%
maximumDepthInMeters 12,003
100.0%
minimumDepthInMeters 12,003
100.0%
occurrenceStatus 12,003
100.0%
scientificNameID 12,003
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 12,003
100.0%
NO_MATCH 4,503
37.5%
MARINE_UNSURE 1,024
8.5%
NO_ACCEPTED_NAME 55
0.5%
WORMS_ANNOTATION_UNRESOLVABLE 18
0.1%
NOT_MARINE 4
0.0%
WORMS_ANNOTATION_RESOLVABLE 4
0.0%

Measurement types

DNA derived data