Name: Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes
License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

We used flow cytometry sorting of raw seawater to identify novel bacterial phylotypes found in physical association with photosynthetic picoeukaryotes. In total, five samples were collected at the Santa Cruz wharf on Monterey Bay during summer and fall, 2014. The phylogeny of associated microbes was assessed through Illumina MiSeq sequencing of amplicons of the 16S rRNA gene from unsorted seawater <10 m >0.2 m as well as triplicate samples of 1000 sorted photosynthetic picoeukaryote cells.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00003000.zip

Contacts:

University of California Santa Cruz
University of California Santa Cruz

5,874

occurrence records

650

taxa

species

Taxa

Missing and invalid fields

Field	Missing
coordinateUncertaintyInMeters	5,874	100.0%
decimalLatitude	142	2.4%
decimalLongitude	142	2.4%
eventDate	142	2.4%
maximumDepthInMeters	5,874	100.0%
minimumDepthInMeters	5,874	100.0%
occurrenceStatus	5,874	100.0%
scientificNameID	5,874	100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag	Records
NO_DEPTH	5,874	100.0%
NO_MATCH	2,184	37.2%
MARINE_UNSURE	755	12.9%
NO_COORD	142	2.4%
NO_ACCEPTED_NAME	21	0.4%
WORMS_ANNOTATION_UNRESOLVABLE	10	0.2%
NOT_MARINE	9	0.2%

Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes

Taxa

Missing and invalid fields

Quality flags

Measurement types

DNA derived data