Dataset

Tyne oil spill snorkels Raw sequence reads

OBIS Secretariat Open in mapper Explore occurrences

Bioelectrochemical bioremediation to accelerate hydrocarbon biodegradation in anoxic marine sediments, using "oil-spill snorkels". The snorkels (rods of conductive material) were positioned to create an electrochemical connection between the anoxic contaminated sediment and the oxic overlying water. In principle, the snorkel could take advantage of the capability of electro-active bacteria to anaerobically oxidize hydrocarbons with the snorkel serving as a respiratory electron acceptor.Fifty 16S rRNA amplicon libraries were generated representing microbial communities from the snorkel, no oil snorkel, control, no oil control and abiotic experiments at 175, 286 and 466 days during the incubation period, as well as from the initial sediments with and without oil (Time 0).

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004505.zip

Contacts:

Newcastle University
Newcastle University

24,315
occurrence records
780
taxa
15
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 24,315
100.0%
maximumDepthInMeters 24,315
100.0%
minimumDepthInMeters 24,315
100.0%
occurrenceStatus 24,315
100.0%
scientificNameID 24,315
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 24,315
100.0%
ON_LAND 24,315
100.0%
NO_MATCH 10,774
44.3%
MARINE_UNSURE 4,069
16.7%
NOT_MARINE 58
0.2%
NO_ACCEPTED_NAME 26
0.1%
WORMS_ANNOTATION_UNRESOLVABLE 22
0.1%

Measurement types

DNA derived data