Dataset

Metagenomics of Jacarepagua Lagoon

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The Jacarepagua lagoon is a coastal shallow water body in the Rio de Janeiro city (Brazil) historically contaminated by Microcystins ("MCs" - toxin produced by cyanobacteria with carcinogenic potential for mammals). These molecules are stable and resistant to variation in some physical and chemical factors (i.e. temperature, pH) and some common proteases. Besides, many studies have evidenced the process of bioaccumulation of MCs in different organisms, its adsorption to sediment particles and also its biodegradation by microorganisms from the environment. Previously, we evaluated the removal of MC from water by microorganism assemblages and biodegradation process was observed in the sediment as well as in the interstitial water. Furthermore, we analysed the microbial community through sequencing 16S rDNA by Illumina and showed the differences between these two microbiomes. Moreover, major identified phyla were Chloroflexi, Proteobacteria, Firmicutes, OP3 and the identified OTUs several genera described as MC-degraders were detected

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004500.zip

Contacts:

UFRJ
UFRJ

3,646
occurrence records
708
taxa
10
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 3,646
100.0%
maximumDepthInMeters 3,646
100.0%
minimumDepthInMeters 3,646
100.0%
occurrenceStatus 3,646
100.0%
scientificNameID 3,646
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 3,646
100.0%
ON_LAND 3,646
100.0%
NO_MATCH 2,013
55.2%
MARINE_UNSURE 575
15.8%
NOT_MARINE 9
0.2%
NO_ACCEPTED_NAME 3
0.1%
WORMS_ANNOTATION_UNRESOLVABLE 1
0.0%

Measurement types

DNA derived data