Dataset

Imaging flow cytometry from SMHI in Tangesund 2016

EurOBIS MeasurementOrFact Open in mapper Explore occurrences

An imaging flow cytometer, the Imaging FlowCytobot, was used to investigate phytoplankton abundance and diversity in a fjordal system on the Swedish Skagerrak coast. Samples of 5 mL were collected approximately every 25 minutes. An automated winch was used to move the IFCB to different depths. Chlorophyll fluorescence of individual organisms was used to trigger the camera in the instrument. Several thousand images were collected in each sample. Automated image analyses was used to analyse the images produced to identify and count cells of different plankton taxa.

Citation: Swedish Meteorological and Hydrological Institute (2018). Imaging flow cytometry from SMHI in Tangesund 2016.

Published: September 17, 2025 at 10:13

URL: http://ipt.vliz.be/eurobis/resource?r=phytoplankton-jerico-ifcb

Swedish Meteorological and Hydrological Institute
Swedish Meteorological and Hydrological Institute

Flanders Marine Institute (VLIZ)
Flanders Marine Institute (VLIZ)

24,822
occurrence records
49,090
measurements and facts
9
taxa
7
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 24,822
100.0%
maximumDepthInMeters 24,822
100.0%
minimumDepthInMeters 24,822
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 24,822
100.0%

Measurement types

DNA derived data