Name: Metagenome analysis of picoeukaryotes from surface seawater
License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

Surface seawater was collected at two sampling sites in Sendai Bay (C5: 141.083W, 37.976N; C12: 141.317W, 37.974N), Miyagi, Japan on October 7 and December 1 in 2013. Suspended particles were concentrated to 100 fold and divided into two subsamples: (1) mixied with DMSO(5%) and frozen to sore in liquid nitrogen, (2) kept non-frozen. Picophytoplankton cells were sorted by flow cytometry. The genomic DNA was extracted and amplified by whole genome amplification. Partial 18S rRNA gene of the eukaryotes was amplified and sequenced using GS junior.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00002943.zip

Contacts:

NIES
NIES

2,021

occurrence records

275

taxa

species

Taxa

Missing and invalid fields

Field	Missing
coordinateUncertaintyInMeters	2,021	100.0%
occurrenceStatus	2,021	100.0%
scientificNameID	2,021	100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag	Records
NO_MATCH	182	9.0%
NO_ACCEPTED_NAME	63	3.1%
MARINE_UNSURE	42	2.1%
WORMS_ANNOTATION_UNRESOLVABLE	25	1.2%
WORMS_ANNOTATION_RESOLVABLE	8	0.4%
WORMS_ANNOTATION_REJECT_AMBIGUOUS	3	0.1%

Metagenome analysis of picoeukaryotes from surface seawater

Taxa

Missing and invalid fields

Quality flags

Measurement types

DNA derived data