Dataset

Comparative analysis of bacterial community-metagenomics in coastal Gulf of Mexico sediment microcosms following exposure to Macondo oil (MC252)

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Microbial communities play a crucial role in microbial loop process that constitute the foundation of the ecosystem structure and function. The goal of this study was to monitor microbial community shift in the Gulf of Mexico coastal sediments following exposure to MC252 oil in a laboratory microcosm experiment. We used bacterial tag encoded FLX pyrosequencing (bTEFAP) approach targeting the 16S rRNA gene. We also studied the presence of the biodegradative genes in pure cultures of bacteria from oil-treated sediments samples.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004360.zip

Contacts:

University of Alabama at Birmingham
University of Alabama at Birmingham

2,228
occurrence records
351
taxa
8
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 2,228
100.0%
maximumDepthInMeters 2,228
100.0%
minimumDepthInMeters 2,228
100.0%
occurrenceStatus 2,228
100.0%
scientificNameID 2,228
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 2,228
100.0%
ON_LAND 1,000
44.9%
NO_MATCH 867
38.9%
MARINE_UNSURE 209
9.4%
NOT_MARINE 2
0.1%
NO_ACCEPTED_NAME 2
0.1%

Measurement types

DNA derived data