Dataset

Marine Microbes from RV Investigator voyage IN2014_E03, Australia (2014)

OBIS Australia DNADerivedData Open in mapper Explore occurrences

This dataset was acquired on the RV Investigator voyage IN2014_E03. This was a gear trials voyage testing gear and work procedures prior to beginning scientific surveys. Full details of data, reports and publications of the voyage is at http://www.marine.csiro.au/data/trawler/survey_details.cfm?survey=IN2014_E03 Note on data download/processing: Data downloaded from Australian Microbiome Initiative via Bioplatforms Australia Data Portal on 17 June 2022. The search filter applied to download data from Bioplatforms Australia Data portal are stored in the Darwin Core property (identificationRemarks). Taxonomy is assigned according to the taxonomic database (SILVA 138) and method (Sklearn) which is stored in the Darwin Core Extension DNA derived data property (otu_db). Prefix were removed from the taxonomic names as shown in the example (e.g. d__Bacteria to Bacteria). Scientific name is assigned to the valid name available from the highest taxonomic rank. This collection is published as Darwin Core Occurrence, so the event level measurements need to be replicated for every occurrence. Instead of data replication, the event level eMoF data are made available separately at https://www.marine.csiro.au/data/services/obisau/emof_export.cfm?ipt_resource=bioplatforms_mm_in2014_e03

Citation: Please see https://www.australianmicrobiome.com/protocols/acknowledgements/ for citation examples and links to the data policy.

Published: June 22, 2022 at 14:40

URL: https://www.marine.csiro.au/ipt/resource?r=bioplatforms_mm_in2014_e03

46,432
occurrence records
46,432
sequences
499
taxa
147
species

Taxa

Missing and invalid fields

Field Missing Invalid
scientificNameID 8,430
18.2%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 7,770
16.7%
WORMS_ANNOTATION_UNRESOLVABLE 643
1.4%
MARINE_UNSURE 495
1.1%
NO_ACCEPTED_NAME 141
0.3%

Measurement types

DNA derived data