Dataset

Sediment Metagenome Raw sequence reads

OBIS Secretariat Open in mapper Explore occurrences

Metagenomic sequences of Archaea, Bacteria and Eukarya originating from Spiekeroog salt marsh sediment

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004702.zip

Contacts:

Genomic and Applied Microbiology & Goettingen Genomics Laboratory
Genomic and Applied Microbiology & Goettingen Genomics Laboratory

140,115
occurrence records
2,513
taxa
304
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 140,115
100.0%
maximumDepthInMeters 140,115
100.0%
minimumDepthInMeters 140,115
100.0%
occurrenceStatus 140,115
100.0%
scientificNameID 140,115
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 140,115
100.0%
ON_LAND 102,861
73.4%
NO_MATCH 56,198
40.1%
MARINE_UNSURE 14,933
10.7%
NO_ACCEPTED_NAME 440
0.3%
NOT_MARINE 369
0.3%
WORMS_ANNOTATION_UNRESOLVABLE 212
0.2%
WORMS_ANNOTATION_RESOLVABLE 87
0.1%
WORMS_ANNOTATION_REJECT_AMBIGUOUS 8
0.0%

Measurement types

DNA derived data