Dataset

Environmental baseline data in abyssal plain off Minami Torishima based on 18S rRNA gene obtained from the 2022 cruise

OBIS Japan DNADerivedData Open in mapper Explore occurrences

SIP Ocean program conducted the research cruises for technical development and data collection of baseline condition in deep-sea environments off Minami Torishima. This data set contains 18S rRNA gene based phylogenetic composition of meiofauna community determined from sediment core samples which have been collected by the Shinkai 6500 in the 2022 cruise of R/V Yokosuka (YK22-08C). The two kinds of PCR primer set have been used for the same sample to compare the phylogenetic composition.

Citation: Inomata K. Kawagucci S. Miwa T. and Yamamoto H (2023) Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene, 18S rRNA gene, physicochemical parameters and meiofauna community, and megafauna occurrence. https://doi.org/10.48518/00018

Published: July 04, 2023 at 07:44

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License

URL: https://www.godac.jamstec.go.jp/ipt/resource?r=jamstec_sip-2-meiofauna-18s-data_2022

Contacts:

Hiroyuki Yamamoto
JAMSTEC

Shinsuke Kawagucci
JAMSTEC

Kentaro Inomata
IDEA Consultants

1,316
occurrence records
1,316
sequences
63
taxa
17
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 1,316
100.0%
scientificNameID 70 14
6.4%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 42
3.2%
WORMS_ANNOTATION_UNRESOLVABLE 28
2.1%

Measurement types

DNA derived data