Dataset

Geotraces Raw sequence reads

OBIS Secretariat Open in mapper Explore occurrences

This study is aimed to explore the microbial lifestyle in ocean and interpret metabolic potentials using metagenome/metaproteome dataset. Furthermore, it is important to learn about various mode of energy consumption that may support marine microbes i.e. photoautotrophy, chemoautotrophy and heterotrophy.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00005497.zip

Contacts:

University of Vienna
University of Vienna

2,360
occurrence records
813
taxa
67
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 2,360
100.0%
maximumDepthInMeters 2,360
100.0%
minimumDepthInMeters 2,360
100.0%
occurrenceStatus 2,360
100.0%
scientificNameID 2,360
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 2,360
100.0%
NO_MATCH 820
34.7%
MARINE_UNSURE 214
9.1%
NO_ACCEPTED_NAME 18
0.8%
NOT_MARINE 4
0.2%
WORMS_ANNOTATION_UNRESOLVABLE 3
0.1%

Measurement types

DNA derived data