Dataset

Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact

OBIS Secretariat DNADerivedData Open in mapper Explore occurrences

Here we pilot a novel, rapid and non-invasive environmental DNA (eDNA) metabarcoding approach specifically targeted to infer shark presence, diversity and eDNA read abundance in tropical habitats. We identified at least 21 shark species, from both Caribbean and Pacific Coral Sea water samples, whose geographical patterns of diversity and read abundance coincide with geographical differences in levels of anthropogenic pressure and conservation effort. We demonstrate that eDNA metabarcoding can be effectively employed to study shark diversity.

Citation: Bakker J, Wangensteen O S, Chapman D D, Boussarie G, Buddo D, Guttridge T L, Hertler H, Mouillot D, Vigliola L, Mariani S, Earl C (2023). Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact. Version 2.0. OBIS Secretariat. Occurrence dataset. https://doi.org/10.25607/tciqld

Published: October 25, 2023 at 20:33

URL: https://ipt.obis.org/secretariat/resource?r=new-caledonia-bakker-2017

Judith Bakker
University of Salford

Owen S. Wangensteen
University of Salford

Demian D. Chapman
Florida International University

Germain Boussarie
Université Montpellier

Dayne Buddo
University of the West Indies

Tristan L. Guttridge
Bimini Biological Field Station Foundation

Heidi Hertler
The SFS Centre for Marine Resource Studies

David Mouillot
Université Montpellier

Laurent Vigliola
Laboratoire d’Excellence Labex Corail

Stefano Mariani
University of Salford

OBIS Secretariat
OBIS

Chandra Earl
UNESCO

509
occurrence records
509
sequences
43
taxa
25
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 509
100.0%
maximumDepthInMeters 509
100.0%
minimumDepthInMeters 509
100.0%
scientificNameID 130
25.5%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 509
100.0%
NO_MATCH 74
14.5%
NOT_MARINE 56
11.0%
NO_ACCEPTED_NAME 28
5.5%
WORMS_ANNOTATION_UNRESOLVABLE 27
5.3%
ON_LAND 3
0.6%

Measurement types

DNA derived data