Dataset

ocean bacteria Metagenomic assembly

OBIS Secretariat Open in mapper Explore occurrences

Bacterial DNA was isolated from two water samples: 1 location in the Bering Strait from the chlorophyll max layer (7m depth) and 1 location in the Chukchi Sea from bottom water (55m depth). The samples were collected with the purpose of sequencing the metagenome to serve as a protein identification database for a metaproteomics study.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00002714.zip

Contacts:

University of Washington
University of Washington

1,594
occurrence records
535
taxa
41
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 1,594
100.0%
maximumDepthInMeters 1,594
100.0%
minimumDepthInMeters 1,594
100.0%
occurrenceStatus 1,594
100.0%
scientificNameID 1,594
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 1,594
100.0%
NO_MATCH 683
42.8%
MARINE_UNSURE 169
10.6%
NO_ACCEPTED_NAME 6
0.4%
WORMS_ANNOTATION_UNRESOLVABLE 2
0.1%
NOT_MARINE 1
0.1%

Measurement types

DNA derived data