Dataset

Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene

OBIS Japan DNADerivedData Open in mapper Explore occurrences

SIP Ocean program conducted the research cruises for technical development and data collection of baseline condition in deep-sea environments off Minami Torishima. This data set contains 16S rRNA gene based phylogenetic composition of prokaryotic community determined from sediment core samples which have been collected in the 2019 cruise of R/V Kaiyo-Maru No.1 (KAIYO ENGINEERING CO., LTD.).

Citation: Inomata K. Kawagucci S. Miwa T. and Yamamoto H (2023) Environmental baseline data in abyssal plain off Minami Torishima based on 16S rRNA gene, 18S rRNA gene, physicochemical parameters and meiofauna community, and megafauna occurrence. https://doi.org/10.48518/00013

Published: July 06, 2023 at 06:55

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License

URL: https://www.godac.jamstec.go.jp/ipt/resource?r=jamstec_sip-2-prokaryotes-16s-data_2019

Contacts:

Hiroyuki Yamamoto
JAMSTEC

Shinsuke Kawagucci
JAMSTEC

Kentaro Inomata
IDEA Consultants

4,080
occurrence records
4,080
sequences
115
taxa
3
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 4,080
100.0%
scientificNameID 896
22.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
MARINE_UNSURE 416
10.2%
NO_MATCH 80
2.0%

Measurement types

DNA derived data