Dataset

Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition

OBIS Secretariat Open in mapper Explore occurrences

One of the main concerns about the Arctic Ocean has been the changing sea ice regime with a reduction in the summer sea ice extent and a shift in dominance from thicker, perennial multiyear ice towards thinner, first-year ice. As the dietary basis of marine food webs and central players of biogeochemical cycles, microbial communities play an irreplaceable role when evaluating the ecological impact of the Arctics thinner ice regime. During the Norwegian young sea Ice cruise 2015 (N-ICE2015), that took place in drifting pack ice north of Svalbard between January-June 2015, seawater was collected, at 5, 20 or 50, 250 m depth in 9th March, 27th April and 16th June, together with physical and biogeochemical data. Through the massively parallel sequencing of environmental DNA (metagenomics) we expect to get a snapshot of the Arctics microbiome structure, key functions and dynamic through the dark-light transition.

Published: September 22, 2022 at 08:44

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00001869.zip

Contacts:

CIIMAR - Interdisciplinary Centre of Marine and Environmental Research
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research

2,621
occurrence records
577
taxa
43
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 2,621
100.0%
maximumDepthInMeters 2,621
100.0%
minimumDepthInMeters 2,621
100.0%
occurrenceStatus 2,621
100.0%
scientificNameID 2,621
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 2,621
100.0%
NO_MATCH 803
30.6%
MARINE_UNSURE 193
7.4%
NO_ACCEPTED_NAME 24
0.9%
WORMS_ANNOTATION_UNRESOLVABLE 9
0.3%
NOT_MARINE 3
0.1%

Measurement types

DNA derived data