Dataset

marine metagenome Targeted Locus (Loci)

OBIS Secretariat Open in mapper Explore occurrences

The goal of this project is to examine and integrate taxonomic, genetic, and functional diversity in marine lakes in Palau and Indonesia. Samples have been collected at multiple depths in multiple lakes since 2010. DNA was extracted from filtered water samples, and archaeal/bacterial 16S rRNA genes were amplified and then sequenced (using 454 in 2010 and Illumina thereafter).

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004167.zip

Contacts:

University of California, Merced
University of California, Merced

2,041
occurrence records
815
taxa
48
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 2,041
100.0%
maximumDepthInMeters 2,041
100.0%
minimumDepthInMeters 2,041
100.0%
occurrenceStatus 2,041
100.0%
scientificNameID 2,041
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 2,041
100.0%
ON_LAND 2,041
100.0%
NO_MATCH 728
35.7%
MARINE_UNSURE 210
10.3%
NO_ACCEPTED_NAME 6
0.3%
NOT_MARINE 3
0.1%
WORMS_ANNOTATION_REJECT_AMBIGUOUS 2
0.1%
WORMS_ANNOTATION_UNRESOLVABLE 2
0.1%

Measurement types

DNA derived data