Dataset

NEON Surface Water Microbe Marker Gene Sequences - 2014

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This study provides the sequence data for the NEON data product, Surface water microbe marker gene sequences (NEON.DP1.20282). The goal of this project is to track changes in the diversity and composition of bacteria, archaea and fungi in planktonic aquatic ecosystems through space and time. NEON collects water column microbes from various depths at numerous sites distributed across the United States. Total genomic DNA is extracted and the 16S and ITS regions of the rRNA cistron are sequenced using high-throughput methods. For additional details and data, visit the NEON Data Portal at http://data.neonscience.org.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00005075.zip

Contacts:

National Ecological Observatory Network
National Ecological Observatory Network

1,758
occurrence records
322
taxa
4
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 1,758
100.0%
maximumDepthInMeters 1,545
87.9%
minimumDepthInMeters 1,545
87.9%
occurrenceStatus 1,758
100.0%
scientificNameID 1,758
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
ON_LAND 1,758
100.0%
NO_DEPTH 1,545
87.9%
NO_MATCH 748
42.5%
MARINE_UNSURE 321
18.3%
DEPTH_EXCEEDS_BATH 213
12.1%
NOT_MARINE 7
0.4%
NO_ACCEPTED_NAME 5
0.3%

Measurement types

DNA derived data