Dataset

Ecological Genomics of a Seasonally Anoxic Fjord; Saanich Inlet

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Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

Published: September 22, 2022 at 08:44

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00005850.zip

Contacts:

University of British Columbia
University of British Columbia

173,348
occurrence records
1,591
taxa
139
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 173,348
100.0%
maximumDepthInMeters 170,068
98.1%
minimumDepthInMeters 170,068
98.1%
occurrenceStatus 173,348
100.0%
scientificNameID 173,348
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 170,068
98.1%
NO_MATCH 60,139
34.7%
MARINE_UNSURE 14,622
8.4%
NO_ACCEPTED_NAME 835
0.5%
WORMS_ANNOTATION_UNRESOLVABLE 586
0.3%
NOT_MARINE 405
0.2%
DEPTH_EXCEEDS_BATH 394
0.2%
WORMS_ANNOTATION_REJECT_AMBIGUOUS 24
0.0%
WORMS_ANNOTATION_RESOLVABLE 9
0.0%

Measurement types

DNA derived data