Dataset

Ocean sediment-basement interface Targeted Locus (Loci)

OBIS Secretariat Open in mapper Explore occurrences

Previous studies of microbial abundance and geochemistry in deep marine sediments indicate a stimulation of microbial activity near the sediment-basement interface. Furthermore, the few studies thus far conducted in deep oceanic crust reveal an active microbial community in this habitat. Yet, the extent to which microbial communities in bottom sediments and underlying crustal habitats interact is unclear. Are microbial communities in sediments seeded from basement communities, or vice versa? If there is influence from one habitat type on the other, how far does this influence extend, both with vertical distance away from the interface and laterally along the flow path of fluids within basement? We propose to conduct tag pyrosequencing on samples from a spectrum of sediment-basement habitats to identify patterns in microbial community shifts across sediment-basement interfaces. Such comparisons will allow us to evaluate whether microbial groups from one habitat are found in another, and to examine whether members of the ''rare biosphere'' in one habitat come to dominate in another. Analysis of the pyrosequencing data will help us better understand how subsurface microbial communities are established and evolve, in addition to expanding our knowledge of microbial biogeography across sediment-basement interfaces in different oceanic basins.

Published: September 20, 2022 at 12:42

License: This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY) 4.0 License

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00003116.zip

Contacts:

Marine Biological Laboratory
Marine Biological Laboratory

1,440
occurrence records
349
taxa
1
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 1,440
100.0%
occurrenceStatus 1,440
100.0%
scientificNameID 1,440
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_MATCH 461
32.0%
MARINE_UNSURE 201
14.0%
NOT_MARINE 3
0.2%
WORMS_ANNOTATION_UNRESOLVABLE 3
0.2%
NO_ACCEPTED_NAME 1
0.1%

Measurement types

DNA derived data